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Galaxy History ' HYBrowse_test'


DatasetAnnotation
21: PRJNA320470.gtack
4,788 regions, 1 comments
format: interval, database: hg_g1k_v37
Info: uploaded interval file
view in GeneTrack
1.Chrom2.Start3.End4567
###seqidstartendidradiuslaminedges
chr19000001000000chr1:900000-10000000.11.
chr110000001100000chr1:1000000-11000000.11.
chr112000001300000chr1:1200000-13000000.11chr1:900000-1000000;chr1:1000000-1100000
chr120000002100000chr1:2000000-21000000.11.
chr121000002200000chr1:2100000-22000000.11.
22: PRJNA320470_GTrack
4,788 lines, 5 comments
format: gtrack, database: hg19
1234567
##gtrack version: 1.0
##track type: linked segments
##uninterrupted data lines: true
##no overlapping elements: true
###seqidstartendidedgesradiuslamin
chr19000001000000chr1:900000-1000000.0.11
None
23: HyperBrowser: 'Enrichment of 3D co-localization' on 'GM06990-100k (GM06990)' vs 'PRJNA320470_GTrack (22)'
11.2 Kb
format: html, database: hg19
Info: Using all ensemble genes (clustered) of genome build "hg19" as bins
HTML file
24: Validate GTrack file
757 bytes
format: customhtml, database: hg19
HTML file
28: significantInteractions.txt
3,236 lines
format: tabular, database: hg_g1k_v37
Info: uploaded tabular fileuploaded tabular fileuploaded tabular file
123456789101112131415161718192021222324252627282930
InteractionIDPeakID(1)chr(1)start(1)end(1)strand(1)TotalReads(1)PeakID(2)chr(2)start(2)end(2)strand(2)TotalReads(2)DistanceInteractionReadsExpectedReadsZ-scoreLogPFDR(Benjamini,basedon4.90e+08totaltests)CircosThickness
interaction1 chr17-48300000 chr17 48300000 48400000 + 249.0 chr17-48200000 chr17 48200000 48300000 + 388.0 83004 38.000000 5.287764 3.043028 -47.064644 0.000000 4
interaction2 chr2-28600000 chr2 28600000 28700000 + 298.0 chr2-27900000 chr2 27900000 28000000 + 276.0 681891 18.000000 1.348331 2.795320 -32.777050 0.000001 2
interaction3 chr11-64700000 chr11 64700000 64800000 + 175.0 chr11-64600000 chr11 64600000 64700000 + 315.0 79296 23.000000 3.203751 2.967137 -29.022854 0.000041 2
interaction4 chr9-137500000 chr9 137500000 137600000 + 306.0 chr9-137300000 chr9 137300000 137400000 + 244.0 201869 22.000000 3.199713 2.497437 -26.653841 0.000325 2
interaction5 chr22-38700000 chr22 38700000 38800000 + 248.0 chr22-38600000 chr22 38600000 38700000 + 188.0 53913 20.000000 2.674283 2.995543 -25.994632 0.000503 2
30: Create GTrack file from unstructured tabular data
5.2 Kb
An error occurred running this job:
Error in line
-------------
chr1 900000 1000000 0 0=.;1=.;2;3=.;4=.;5=.;6=.;7=.;8=.;9=.;10=.;11=.;12=.;13=.;14=.;15=.;16=.;17=.;18=.;19=.;20=.;21=.;22=.;23=.;24=.;25=.;26=.;27=.;28=.;29=.;30=.;31=.;32=.;33=.;34=.;35=.;36=.;37=.;38=.;39=.;40=.;41=.;42=.;4
36: CosmicCompleteCNA-cleaned_PriHisto-10.tsv.bed
35,606 regions
format: bed, database: hg_g1k_v37
Info: uploaded bed file
1.Chrom2.Start3.End
chr1777165833413
chr1786638822400
chr1806901829889
chr1817186850609
chr1817186901516
chr1817186903175
43: Filter-CosmicCompleteCNA-cleaned_PriHisto-10.tsv.bed
31,726 regions
format: bed, database: hg_g1k_v37
Info: Filtering with (c1!='chr17' and c3!=81231024) and (c1!='chr5' and c2!=181287458),
kept 89.10% of 35606 valid lines (35606 total lines).
1.Chrom2.Start3.End
chr1777165833413
chr1786638822400
chr1806901829889
chr1817186850609
chr1817186901516
chr1817186903175
None
44: Colocalization between two point tracks tool
22.3 Kb
format: customhtml, database: hg19
HTML file
45: Colocalization between two point tracks tool
21.9 Kb
format: customhtml, database: hg19
HTML file
46: HyperBrowser: 'Colocalized in 3D?' on 'GM06990-100k (GM06990)' vs 'Filter-CosmicCompleteCNA-cleaned_PriHisto-10.tsv.bed (43)'
27.3 Kb
format: html, database: hg19
Info: Using all ensemble genes (clustered) of genome build "hg19" as bins
HTML file
50: HyperBrowser: 'Colocalized in 3D?' on 'IMR90-1M (IMR90)' vs 'lung development (Biological process)'
28.0 Kb
format: html, database: hg19
Info: Using all chromosomes of genome build "hg19" as bins
HTML file
51: HyperBrowser: 'Enrichment of 3D co-localization' on 'IMR90-1M (IMR90)' vs 'lung development (Biological process)'
11.3 Kb
format: html, database: hg19
Info: Using all chromosome arms of genome build "hg19" as bins
HTML file
52: HyperBrowser: 'Visualize linked elements as subgraph' on 'IMR90-1M (IMR90)' vs 'lung development (Biological process)'
10.5 Kb
format: html, database: hg19
Info: Using all chromosome arms of genome build "hg19" as bins
HTML file
53: Colocalization between two point tracks tool
7.1 Kb
format: customhtml, database: hg19
HTML file
54: Colocalization between two point tracks tool
21.8 Kb
format: customhtml, database: hg19
HTML file
56: GSE63525_CH12-LX.GtrackIn.tab
3,332 regions
format: bed, database: hg_g1k_v37
Info: uploaded bed file
1.Chrom2.Start3.End4.Name56.Strand7
chr1x1x2chr2y1y2fdr_bl
chr18527000085280000chr187480000874900000.0
chr11117100000117110000chr111172100001172200004.1956713854e-47
chr116692000066930000chr1167160000671700001.82486666228e-73
chr117763000077640000chr1177780000777900002.9319459294e-36
chr11116180000116190000chr111163000001163100009.47104812159e-55
None
58: Create GTrack file from unstructured tabular data
5,741 lines, 5,318 comments
format: gtrack, database: mm9
123
##gtrack version: 1.0
##track type: linked genome partition
##undirected edges: true
##edge weights: true
##sorted elements: true
###endidedges
61: GSE63525_GM12878_primary_HiCCUPS_looplist.txt_hibrowsein.txt
8,055 lines
format: tabular, database: hg_g1k_v37
Info: uploaded tabular file
1234567
chr1x1x2chr2y1y2fdr_bl
chr1424800000248100001424900000249100003.8792908709e-116
chr1164610000646200001164660000646700002.64089804841e-100
chr1424710000247200001424760000247700002.68066380436e-80
chr11111230000111240000111112800001112900004.15163542821e-74
chr14650000046510000146640000466500005.68429401292e-234
63: Integrate track from history
2.9 Kb
format: html, database: mm9
HTML file
None
64: head-GSE63525_CH12.GtrackIn.tab
3,332 lines
format: tabular, database: mm9
Info: uploaded tabular file
1234567
chr1x1x2chr2y1y2fdr_bl
chr18527000085280000chr187480000874900000.0
chr11117100000117110000chr111172100001172200004.1956713854e-47
chr116692000066930000chr1167160000671700001.82486666228e-73
chr117763000077640000chr1177780000777900002.9319459294e-36
chr11116180000116190000chr111163000001163100009.47104812159e-55
66: Integrate track from history
399 bytes
format: html, database: mm9
HTML file