<<Back to main

Note on Genomic Tracks:

We refer to a genome-scale dataset of coordinates relative to a reference genome as a genomic track. We base this term on UCSC genome browser, and in short, any data that can be viewed at the UCSC genome browser is a genomic track. A range of genomic features come in this form, such as those generated by ChIP-seq (histone modifications, transcription factor binding etc.), those generated by various chip platforms (e.g. methylation arrays, SNP arrays etc), and various features annotated based on DNA sequence characteristics or other forms of evidence (e.g. RNA data mapped back to genomic DNA). Essentially all data from projects like ENCODE, Roadmap Epigenomics and FANTOM 5 are of this kind. Data come in various formats, for instance, gff, bed, wig, vcf, bam or gtrack.

Note:

This is a specialized version of The Genomic Hyperbrowser, focusing on new functionality for analyzing collections of genomic track. More information on the general HyperBrowser functionality and project can be found on the main version of the HyperBrowser.

Contact information

If you have any questions, requests or comments of any kind, please use our discussion forum, available from the Help menu, or send an email to on.oiu.tisu@stseuqer-resworbrepyh‎. We are happy to respond. We especially encourage collaborative projects for further development. If you find any bugs, please send an email to on.oiu.tisu@sgub-resworbrepyh.

If you register as a user, you will get the option to subscribe to the on.oiu.tisu@ofni-resworbrepyh mailing list. Here, we will send announcements and administrative messages for users of the system. A backlog of announcements is available from the Help menu. Citation info is also available from the Help menu.

This project is being developed by the Norwegian bioinformatics community as an open-source project under the GPL license v3, supported by various national and local bodies.

For further info on Norwegian bioinformatics, see www.bioinfo.no.