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Note on GSuite variants

Gsuite files come in three variants:

  • - Remote GSuite: when compiling from external databases, the resulting GSuite will essentially be a list of URLs to files on external servers. One can also manually construct a remote GSuite as a simple text file of URLs to remote files. Before working on this data, the files need to be downloaded to the local server (to achieve a local textual GSuite).
  • - Local textual GSuite: When compilling from history elements, the resulting GSuite will essentially be a list of references to textual files in the Galaxy history. Using the tool "Fetch remote GSuite datasets" also results in a GSuite of this variant (the tool will implicitly download the remote files to hidden local history elements to form the basis for this variant of GSuite). Such a GSuite can be used in tools that manipulate textual track files. Before analyzing the tracks, they need to be preprocessed (to achieve a local binary GSuite).
  • - Local binary GSuite: When compiling from HyperBrowser repository, the resulting GSuite will essentially be a list of references to tracks in binary, indexed format at the server. Using the tool "Preprocess tracks in GSuite for analysis" also results in a GSuite of this variant (the tool will implicitly preprocess the tracks to binary format to form the basis for this variant of GSuite). Such a GSuite can be used in all the analysis tools, as well as some other tools that operate on preprocessed data.

Note:

This is a specialized version of The Genomic Hyperbrowser, focusing on new functionality for analyzing collections of genomic track. More information on the general HyperBrowser functionality and project can be found on the main version of the HyperBrowser.

Contact information

If you have any questions, requests or comments of any kind, please use our discussion forum, available from the Help menu, or send an email to on.oiu.tisu@stseuqer-resworbrepyh‎. We are happy to respond. We especially encourage collaborative projects for further development. If you find any bugs, please send an email to on.oiu.tisu@sgub-resworbrepyh.

If you register as a user, you will get the option to subscribe to the on.oiu.tisu@ofni-resworbrepyh mailing list. Here, we will send announcements and administrative messages for users of the system. A backlog of announcements is available from the Help menu. Citation info is also available from the Help menu.

This project is being developed by the Norwegian bioinformatics community as an open-source project under the GPL license v3, supported by various national and local bodies.

For further info on Norwegian bioinformatics, see www.bioinfo.no.