Inspect k-mer frequency variation

Genome build: Genome info

K-mer (any length):

Region of the genome:

Please select a genome build

Inspect the frequency variation of occurrences of a given k-mer in a specified region along the selected genome. The tool tries to determine appropriate binning of the specified region, and outputs the number of k-mer occurrences per bin as a plot and as underlying textual data.

K-mer

A string based on only the following characters: a, c, g, t, A, C, G, T. Eventual use of case has no effect.

Region of the genome

Region specification as in UCSC Genome browser. * means whole genome. k and m denotes thousand and million bps, respectively. E.g chr1:1-20m