This tool is used to install ProTo tools into the tool menu. The installation process creates a Galaxy tool XML file and adds the tool to the tool menu (in the 'tool_conf.xml' file). After execution, the XML file has been generated and added to the tool configuration file, but Galaxy needs to reload the tool menu for it to become visible. This is done by a Galaxy administrator, either from the Admin menu, or from a link in the output history element from this tool.
Note that the after this tool has been executed but before a Galaxy administrator has reloaded the tool menu, the tool is not available from neither of the 'ProTo tool explorer' tool or from the Galaxy menu.
Select tool: The tool to install.
Tool ID: The Galaxy tool id for the new tool to be created. This is the 'id' argument to the
Tool name: The name of the tool as it will appear in the tool menu. The tool name will appear as a HTML link.
Tool description: The description of the tool as it will appear in the tool menu. The tool description will appear directly after the tool name as normal text.
Tool XML file: The path (relative to '/lib/proto/tools/hyperbrowser') and name of the Galaxy tool XML file to be created. The tool file can be named anything and be placed anywhere (as the 'tool_conf.xml' file contains the path to the tool XML file). However, we encourage the practice of placing the Galaxy tool XML file together with the Python module, in the same directory and with the same name as tool module (with e.g. 'ABCTool.xml' instead of 'AbcTool.py').
Select section in tool_conf.xml file: The section in the tool_conf.xml file wherethe tool should be placed in the menu. This corresponds to the first level in thetool hierarchy.